Berndsen lab

Digital home for the lab at JMU



Publications


The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2


Claire M Ravenburg, Mckayla B Riney, Jonathan D Monroe, Christopher E Berndsen

Acta Crystallogr D Struct Biol, vol. 78, International Union of Crystallography, 2022 May, pp. 560--570


Structural and functional analysis of the human cone-rod homeobox transcription factor


Penelope-Marie B Clanor, Christine N Buchholz, Jonathan E Hayes, Michael A Friedman, Andrew M White, Ray A Enke, Christopher E Berndsen

Proteins, 2022 Mar


Hiding the Vegetables: Teaching Programming to Chemists as a Professional Skill


Christopher E Berndsen, Shveta Gupta

ACS Symposium Series, Teaching Programming across the Chemistry Curriculum, vol. 1387, American Chemical Society, 2021 Jul, pp. 29--41


Unwrapping Enzyme Kinetics


Christopher E Berndsen, Ian R Roy, Nithesh P Chandrasekharan

CourseSource, vol. 7, CourseSource, 2020


Solution structure and assembly of beta-amylase 2 from Arabidopsis thaliana


Nithesh P Chandrasekharan, Claire M Ravenburg, Ian R Roy, Jonathan D Monroe, Christopher E Berndsen

Acta Crystallogr D Struct Biol, vol. 76, International Union of Crystallography, 2020 Apr, pp. 357--365


Resilience of BST-2/Tetherin structure to single amino acid substitutions


Ian R Roy, Camden K Sutton, Christopher E Berndsen

PeerJ, vol. 7, 2019 May, pp. e7043


Quaternary Structure, Salt Sensitivity, and Allosteric Regulation of beta-AMYLASE2 From Arabidopsis thaliana


Jonathan D Monroe, Lauren E Pope, Jillian S Breault, Christopher E Berndsen, Amanda R Storm

Front. Plant Sci., vol. 9, 2018 Aug, p. 1176


In silico modeling of epigenetic-induced changes in photoreceptor cis-regulatory elements


Reafa A Hossain, Nicholas R Dunham, Raymond A Enke, Christopher E Berndsen

Mol. Vis., vol. 24, 2018 Mar, pp. 218--230


Glutathionylation Inhibits the Catalytic Activity of Arabidopsis beta-Amylase3 but Not That of Paralog beta-Amylase1


Amanda R Storm, Matthew R Kohler, Christopher E Berndsen, Jonathan D Monroe

Biochemistry, vol. 57, 2018 Feb, pp. 711--721


Arabidopsis beta-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics


Jonathan D Monroe, Jillian S Breault, Lauren E Pope, Catherine E Torres, Tewaldemedhine B Gebrejesus, Christopher E Berndsen, Amanda R Storm

Plant Physiol., vol. 175, 2017 Dec, pp. 1525--1535


Bending of the BST-2 coiled-coil during viral budding


Kadir A Ozcan, Christopher E Berndsen

Proteins: Struct. Funct. Bioinf., vol. 85, Wiley Online Library, 2017 Nov, pp. 2081--2087


Novel insights into the interaction of UBA5 with UFM1 via a UFM1-interacting sequence


Prasanth Padala, Walaa Oweis, Bayan Mashahreh, Nadine Soudah, Einav Cohen-Kfir, Emily A Todd, Christopher E Berndsen, Reuven Wiener

Sci. Rep., vol. 7, Springer US, 2017 Mar, p. 508


Connecting common genetic polymorphisms to protein function: A modular project sequence for lecture or lab


Christopher E Berndsen, Byron H Young, Quinlin J McCormick, Raymond A Enke

Biochem. Mol. Biol. Educ., vol. 44, 2016 Nov, pp. 526--536


Characterization of the structure and catalytic activity of Legionella pneumophila VipF


Byron H Young, Tracy A Caldwell, Aidan M McKenzie, Oleksandr Kokhan, Christopher E Berndsen

Proteins, vol. 84, 2016 Oct, pp. 1422--1430


The Disulfide Bonds within BST-2 Enhance Tensile Strength during Viral Tethering


Kelly E Du Pont, Aidan M McKenzie, Oleksandr Kokhan, Isaiah Sumner, Christopher E Berndsen

Biochemistry, vol. 55, 2016 Feb, pp. 940--947


Chemical shift assignments for S. cerevisiae Ubc13


D Reid Putney, Emily A Todd, Christopher E Berndsen, Nathan T Wright

Biomol. NMR Assign., vol. 9, Springer Netherlands, 2015 Oct, pp. 407--410


New insights into ubiquitin E3 ligase mechanism


Christopher E Berndsen, Cynthia Wolberger

Nat. Struct. Mol. Biol., vol. 21, 2014 Apr, pp. 301--307


Architectural organization of the metabolic regulatory enzyme ghrelin O-acyltransferase


Martin S Taylor, Travis R Ruch, Po-Yuan Hsiao, Yousang Hwang, Pingfeng Zhang, Lixin Dai, Cheng Ran Lisa Huang, Christopher E Berndsen, Min-Sik Kim, Akhilesh Pandey, Cynthia Wolberger, Ronen Marmorstein, Carolyn Machamer, Jef D Boeke, Philip A Cole

J. Biol. Chem., vol. 288, 2013 Nov, pp. 32211--32228


A conserved asparagine has a structural role in ubiquitin-conjugating enzymes


Christopher E Berndsen, Reuven Wiener, Ian W Yu, Alison E Ringel, Cynthia Wolberger

Nat. Chem. Biol., vol. 9, 2013 Mar, pp. 154--156


A spectrophotometric assay for conjugation of ubiquitin and ubiquitin-like proteins


Christopher E Berndsen, Cynthia Wolberger

Anal. Biochem., vol. 418, Elsevier Inc., 2011 Nov, pp. 102--110


Structural insights into the assembly and function of the SAGA deubiquitinating module


Nadine L Samara, Ajit B Datta, Christopher E Berndsen, Xiangbin Zhang, Tingting Yao, Robert E Cohen, Cynthia Wolberger

Science, vol. 328, 2010 May, pp. 1025--1029


Catalysis and substrate selection by histone/protein lysine acetyltransferases


Christopher E Berndsen, John M Denu

Curr. Opin. Struct. Biol., vol. 18, 2008 Dec, pp. 682--689


Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75


Christopher E Berndsen, Toshiaki Tsubota, Scott E Lindner, Susan Lee, James M Holton, Paul D Kaufman, James L Keck, John M Denu

Nat. Struct. Mol. Biol., vol. 15, 2008 Sep, pp. 948--956


Nucleosome recognition by the Piccolo NuA4 histone acetyltransferase complex


Christopher E Berndsen, William Selleck, Steven J McBryant, Jeffrey C Hansen, Song Tan, John M Denu

Biochemistry, vol. 46, 2007 Feb, pp. 2091--2099


Catalytic mechanism of a MYST family histone acetyltransferase


Christopher E Berndsen, Brittany N Albaugh, Song Tan, John M Denu

Biochemistry, vol. 46, 2007 Jan, pp. 623--629


Assays for mechanistic investigations of protein/histone acetyltransferases


Christopher E Berndsen, John M Denu

Methods, vol. 36, 2005 Aug, pp. 321--331

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